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Biotechnology Information sequence comparison algorithms
Sequence Comparison Algorithms, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+comparison/alignment+basic+local+search+tool/us12565519-156-8-18
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sequence comparison algorithms - by Bioz Stars, 2026-11
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Sequencing:

Article Title: d -Alanylation of Lipoteichoic Acid Contributes to the Virulence of Streptococcus suis
Article Snippet: .. The genetic organization of the S. suis dlt operon is shown in Fig. . Sequence comparison at The National Center for Biotechnology Information ( http://www.ncbi.nlm.nih.gov/BLAST/ ), as well as previous reports ( 17 , 18 , 25 ), showed that the S. suis dlt operon is organized in a fashion similar to that of all dlt operons reported for pathogenic streptococci so far, with the exception of the dlt operon of Streptococcus agalactiae , which also includes two regulatory genes upstream of the dltA gene ( 25 ). ..

Article Title: Isolation and Characterization of Yunnan Variants of the Pseudorabies Virus and Their Pathogenicity in Rats
Article Snippet: The PCR reaction conditions were as follows: 95 °C for 5 min and then 35 cycles of 95 °C for 40 s, 58 °C for 40 s, and 72 °C for 60 s, followed by 72 °C for 5 min. After 1% agarose gel electrophoresis verification, the PCR amplicons were cloned into the pMD18-T vector, and the recombinant plasmid was sequenced by Shanghai Sangong Biotechnology Co., Ltd. (Shanghai, China). .. The sequencing results were confirmed via sequence comparison against PRV sequences in the National Center for Biotechnology Information (NCBI) database. ..

Article Title: Development of a novel EV-A71 monoclonal antibody for monitoring vaccine potency
Article Snippet: .. A total of fourteen protein sequences (FASTA format) of EV-A71 genogroups and genotypes (GenBank accession numbers: AFN20470.1 , BAJ05609.1 , AFN20472.1 , AFN20473.1 , QOP59209.1 , QOP59210.1 , QOP59198.1 , CDN24674.1 , AFN20478.1 , APW85805.1 , AFN20481.1 , QIN85535.1 , AVQ54963.1 , and SJK83382.1 ) were the National Center for Biotechnology Information (NCBI) nucleotide database for sequence comparison ..

Article Title: d -Alanylation of Lipoteichoic Acid Contributes to the Virulence of Streptococcus suis
Article Snippet: .. Sequence comparison at The National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/BLAST/), as well as previous reports (17, 18, 25), showed that the S. suis dlt operon is organized in a fashion similar to that of all dlt operons reported for pathogenic streptococci so far, with the exception of the dlt operon of Streptococcus agalactiae, which also includes two regulatory genes upstream of the dltA gene (25). ..

Comparison:

Article Title: d -Alanylation of Lipoteichoic Acid Contributes to the Virulence of Streptococcus suis
Article Snippet: .. The genetic organization of the S. suis dlt operon is shown in Fig. . Sequence comparison at The National Center for Biotechnology Information ( http://www.ncbi.nlm.nih.gov/BLAST/ ), as well as previous reports ( 17 , 18 , 25 ), showed that the S. suis dlt operon is organized in a fashion similar to that of all dlt operons reported for pathogenic streptococci so far, with the exception of the dlt operon of Streptococcus agalactiae , which also includes two regulatory genes upstream of the dltA gene ( 25 ). ..

Article Title: Isolation and Characterization of Yunnan Variants of the Pseudorabies Virus and Their Pathogenicity in Rats
Article Snippet: The PCR reaction conditions were as follows: 95 °C for 5 min and then 35 cycles of 95 °C for 40 s, 58 °C for 40 s, and 72 °C for 60 s, followed by 72 °C for 5 min. After 1% agarose gel electrophoresis verification, the PCR amplicons were cloned into the pMD18-T vector, and the recombinant plasmid was sequenced by Shanghai Sangong Biotechnology Co., Ltd. (Shanghai, China). .. The sequencing results were confirmed via sequence comparison against PRV sequences in the National Center for Biotechnology Information (NCBI) database. ..

Article Title: Development of a novel EV-A71 monoclonal antibody for monitoring vaccine potency
Article Snippet: .. A total of fourteen protein sequences (FASTA format) of EV-A71 genogroups and genotypes (GenBank accession numbers: AFN20470.1 , BAJ05609.1 , AFN20472.1 , AFN20473.1 , QOP59209.1 , QOP59210.1 , QOP59198.1 , CDN24674.1 , AFN20478.1 , APW85805.1 , AFN20481.1 , QIN85535.1 , AVQ54963.1 , and SJK83382.1 ) were the National Center for Biotechnology Information (NCBI) nucleotide database for sequence comparison ..

Article Title: d -Alanylation of Lipoteichoic Acid Contributes to the Virulence of Streptococcus suis
Article Snippet: .. Sequence comparison at The National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/BLAST/), as well as previous reports (17, 18, 25), showed that the S. suis dlt operon is organized in a fashion similar to that of all dlt operons reported for pathogenic streptococci so far, with the exception of the dlt operon of Streptococcus agalactiae, which also includes two regulatory genes upstream of the dltA gene (25). ..



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Biotechnology Information sequence comparison with ncbi
Comparison of <t>nucleotide</t> <t>sequence</t> homology between 10 goose circovirus strains and reference strains. A shows the results of whole-genome nucleotide homology analysis. B shows the results of Rep protein nucleotide homology analysis. C shows the Results of Cap protein nucleotide homology analysis.The nucleotide sequences of 10 GoCV strains were processed using DNASTAR software to obtain the complete genome, Rep gene, and Cap gene sequences. Corresponding whole genome, Rep, and Cap sequences of reference strains were retrieved from the <t>NCBI</t> database and similarly processed using DNASTAR software. All nucleotide sequence homology analyses were performed using MegAlign, employing the ClustalW Multiple Sequence Alignment program for sequence alignment.
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Image Search Results


Comparison of nucleotide sequence homology between 10 goose circovirus strains and reference strains. A shows the results of whole-genome nucleotide homology analysis. B shows the results of Rep protein nucleotide homology analysis. C shows the Results of Cap protein nucleotide homology analysis.The nucleotide sequences of 10 GoCV strains were processed using DNASTAR software to obtain the complete genome, Rep gene, and Cap gene sequences. Corresponding whole genome, Rep, and Cap sequences of reference strains were retrieved from the NCBI database and similarly processed using DNASTAR software. All nucleotide sequence homology analyses were performed using MegAlign, employing the ClustalW Multiple Sequence Alignment program for sequence alignment.

Journal: Poultry Science

Article Title: Identification and genetic evolutionary analysis of goose circovirus in Shandong and neighboring provinces in China in 2024

doi: 10.1016/j.psj.2025.105826

Figure Lengend Snippet: Comparison of nucleotide sequence homology between 10 goose circovirus strains and reference strains. A shows the results of whole-genome nucleotide homology analysis. B shows the results of Rep protein nucleotide homology analysis. C shows the Results of Cap protein nucleotide homology analysis.The nucleotide sequences of 10 GoCV strains were processed using DNASTAR software to obtain the complete genome, Rep gene, and Cap gene sequences. Corresponding whole genome, Rep, and Cap sequences of reference strains were retrieved from the NCBI database and similarly processed using DNASTAR software. All nucleotide sequence homology analyses were performed using MegAlign, employing the ClustalW Multiple Sequence Alignment program for sequence alignment.

Article Snippet: After performing sequence comparison with NCBI (National Center for Biotechnology Information), the correctly sequenced GoCV gene sequences were aligned with known sequences from GenBank.

Techniques: Comparison, Sequencing, Software